I just released my new Anti-Malware plugin for WordPress. It is still in BETA but I think it will be very helpful in removing malicious scripts and patching security vulnerabilities.
Please feel free to leave feedback and donations are always appreciated.
I made my PHP scripts into a WordPress plugin and installed it on a couple of different servers to test it. Over the next few weeks I will be testing, refining, and improving the plugin to get it ready for release to the WordPress community. Anyone interested in testing it on their WordPress site should contact me and I will set you up with a pre-release version.
I was able to find and trace one of the hacks back to thumb.php file. This turned out to be an old version (1.08, 1.14, etc.) of the popular TimThumb script. It turned out there were a lot of old TimThumb script on the server. Many were found in plugins and others were in themes.
I wrote a script to identify old TimThumb files and upgrade them automatically. Now it looks like we finally have a secure server again.
We figured out that the .htaccess files were getting hacked about every 71 minutes, with a few random exceptions. We could not keep running my automated script every hour so I made a bash script from the command line and set up a cron job to run the script once every minute. If it found any differences between the .htaccess file and the .htaccess.bak file then it would overwrite the changes immediately, and send us an email.
We found some rotten PHP code in some random file throughout the server. Some were new files but some were there before and just had this line added to them. This code uses the eval PHP function to execute the given code. To make it harder to identify what the code does it has be encoded and the additional PHP function base64_decode is needed to decode the gibberish. I didn't even bother to decode this and find out what it does. It was so obvious to my that it was malicious that I added this pattern to my one-click removal script and repaired all the corrupted files at once.
Well, the hack was back. All our hard work for nothing. I knew we needed an automated repair to clean the infected .htaccess files with one click. So I wrote this quick little PHP script to clean all the infections out for us (see picture above). It was a good start but we obviously still had a vulnerability on our server and needed to figure out where it was.
Some of our domains started coming up as Infected in Google's search results. So we started looking on the server and found that most of the domains on our BlueHost account had a new .htaccess file. Even domains that had not had one at all before had a new one.
Upon inspection we discovered that each of these new .htaccess files had new rules that invoked a 301 redirect to another infected server when a user came to our sites from a search engine, or if there was an error on the page (404, 500, etc.) the user would also be redirected.
One of the tell-tail signs that these line in the .htaccess files were malicious was that they were heavily indented, You might not even see anything when you open the file unless you have line-wrap on or have it open on a high resolution screen in a wide window. You can see in the screenshot above how the code starts far to the right of the screen and wraps many time.
We manually removed th infected lines of code and replaced missing lines in each of these files. Believing that we had fixed it we decided to take a closer look later to figure out how the hack was planted.