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Some of those code snippets are clearly truncated or missing something from the beginning of the script. It may be true that not all the script in the affected files is malicious but it would help me greatly to see the whole contents of those infected files (including any non-malicious code that might have been in the file before it was appended with these malicious lines of code) so that I can determine the pattern in the affected scripts and make sure that all the offending code can be removed without damaging the syntax of the original code.
Could you please look for a backup on your server that might contain the whole of the infected files and send those to me directly via email attachments?