I am glad my plugin was helpful to you and fixed your problem on that site, and I hope it helps you with your other sites too.
Honestly, the best way to protect your site is to host it on a Super Secure Server, that is why I created Super Secure Hosting. That is the only way I know of to be sure that your site won’t get infected again. I have moved hundreds of infected sites to my specially secured servers and none of them have been reinfected since.
I just wanted to add my own recommendation to the growing list of people who have benefited from Eli's plugin. I was informed by Google yesterday that one of my websites had Malware and was being blocked. This also cancelled the Adwords campaign.
I installed the plugin, did a full scan, it quarantined the malware files and a secondary scan showed there was nothing else wrong. I then contacted Google asking them to rescan the website for Malware and today the website is back up and running!
What was a potentially nightmare situation was made clear and simple to solve by Eli - and he provides it to us for free! I have just made a donation and fully support him in future developements. Thanks Eli -- Jamie Wonnacott